Category: Projects

Portfolio

GENOTHREAT

Description at http://2010.igem.org/Team:VT-ENSIMAG/Genothreat Paper Adam, L., Kozar, M., Letort, G., Mirat, O., Srivastava, A., Stewart, T., Wilson, M.L., Peccoud, J. (2011). Strengths and limitations of the federal guidance on synthetic DNA. Nature Biotechnology. Code https://sourceforge.net/projects/genoguard/

A step-by-step introduction to rule-based design of synthetic genetic constructs using GenoCAD

Authors Mandy L Wilson, Russell Hertzberg, Laura Adam, Jean Peccoud Publication date 2011/1/1 Book Methods in enzymology Volume 498 Pages 173-188 GenoCAD is an open source web-based system that provides a streamlined, rule-driven process for designing genetic sequences. GenoCAD provides a graphical interface that allows users to design sequences consistent with formalized design strategies specific …

VT-Ensimag biosecurity team at the FBI headquarters

The iGEM team was invited by the FBI to present their work to 30 representatives of 15 government agencies. And we visited the FBI headquarters!

NSF award for GenoTHREAT

The iGEM team already got results! Their project on GenoTHREAT is to be pursued: NSF awarded $1,000,000 to further develop the sequence screening software. More details: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1060776

iGEM team helps prevent rogue use of synthetic biology

The team of students I am advising for iGEM 2010, VT-ENSIMAG biosecurity, is featured in this press release. They are working on implementing and characterizing the federal guidance on synthetic genomics and on building a corresponding software called GenoTHREAT. Learn more in BioTechniques and on Genomeweb.

Modeling structure-function relationships in synthetic DNA sequences using attribute grammars

Authors Yizhi Cai, Matthew W Lux, Laura Adam, Jean Peccoud Publication date 2009/10/9 Journal PLoS computational biology Volume5 Issue10 Pages e1000529 Abstract Recognizing that certain biological functions can be associated with specific DNA sequences has led various fields of biology to adopt the notion of the genetic part. This concept provides a finer level of granularity than the …