{"id":1735,"date":"2016-01-19T00:47:00","date_gmt":"2016-01-19T00:47:00","guid":{"rendered":"http:\/\/ladam.info\/?p=1735"},"modified":"2019-01-19T01:04:47","modified_gmt":"2019-01-19T01:04:47","slug":"gro-for-snowflake-yeast","status":"publish","type":"post","link":"https:\/\/ladam.info\/index.php\/2016\/01\/19\/gro-for-snowflake-yeast\/","title":{"rendered":"Gro for snowflake yeast"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">Gro is a software written in C++ using QT. Gro is a programming language and a 2D simulation environment for cells. The physics and front end has been implemented for e.coli.<\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\"><p> <strong>Specification and simulation of synthetic multicelled behaviors<\/strong>. Jang SS(1), Oishi KT, Egbert RG, Klavins E. Author information: (1)Department of Electrical Engineering, University of Washington, Seattle, WA 98195, USA.  <\/p><\/blockquote>\n\n\n\n<p class=\"wp-block-paragraph\">I did the physics for yeast cells, ellipsoids, using Chipmunk with the option that they can stay attached (&#8216;snowflake yeast&#8217;) so I could simulate the <a href=\"https:\/\/ladam.info\/index.php\/2017\/01\/19\/lysd-language-for-yeast-spatiotemporal-development\/\">LYSD language<\/a>.<\/p>\n\n\n\n<figure class=\"wp-block-image\"><img data-recalc-dims=\"1\" decoding=\"async\" width=\"284\" height=\"153\" loading=\"lazy\" src=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-11-at-5.33.10-PM.png?resize=284%2C153&#038;ssl=1\" alt=\"\" class=\"wp-image-1739\"\/><figcaption>Can I program a flower?<\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image\"><img data-recalc-dims=\"1\" decoding=\"async\" width=\"359\" height=\"158\" loading=\"lazy\" src=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-11-at-5.34.22-PM.png?resize=359%2C158&#038;ssl=1\" alt=\"\" class=\"wp-image-1737\" srcset=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-11-at-5.34.22-PM.png?w=359&amp;ssl=1 359w, https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-11-at-5.34.22-PM.png?resize=300%2C132&amp;ssl=1 300w\" sizes=\"auto, (max-width: 359px) 100vw, 359px\" \/><figcaption>Can I program a chain?<\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image\"><img data-recalc-dims=\"1\" decoding=\"async\" width=\"321\" height=\"272\" loading=\"lazy\" src=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-11-at-5.59.39-PM.png?resize=321%2C272&#038;ssl=1\" alt=\"\" class=\"wp-image-1740\" srcset=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-11-at-5.59.39-PM.png?w=321&amp;ssl=1 321w, https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-11-at-5.59.39-PM.png?resize=300%2C254&amp;ssl=1 300w\" sizes=\"auto, (max-width: 321px) 100vw, 321px\" \/><figcaption>Can I just grow my yeast?<\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image\"><img data-recalc-dims=\"1\" decoding=\"async\" width=\"316\" height=\"182\" loading=\"lazy\" src=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-02-at-4.39.55-PM.png?resize=316%2C182&#038;ssl=1\" alt=\"\" class=\"wp-image-1736\" srcset=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-02-at-4.39.55-PM.png?w=316&amp;ssl=1 316w, https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-02-at-4.39.55-PM.png?resize=300%2C173&amp;ssl=1 300w\" sizes=\"auto, (max-width: 316px) 100vw, 316px\" \/><figcaption> <br>Can I make a tree (chemical diffusion)? <\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image\"><img data-recalc-dims=\"1\" decoding=\"async\" width=\"491\" height=\"340\" loading=\"lazy\" src=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-07-at-2.37.01-PM.png?resize=491%2C340&#038;ssl=1\" alt=\"\" class=\"wp-image-1738\" srcset=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-07-at-2.37.01-PM.png?w=491&amp;ssl=1 491w, https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/Screen-Shot-2016-12-07-at-2.37.01-PM.png?resize=300%2C208&amp;ssl=1 300w\" sizes=\"auto, (max-width: 491px) 100vw, 491px\" \/><figcaption>I think so!<\/figcaption><\/figure>\n","protected":false},"excerpt":{"rendered":"<p>Gro is a software written in C++ using QT. Gro is a programming language and a 2D simulation environment for cells. The physics and front end has been implemented for e.coli. Specification and simulation of synthetic multicelled behaviors. Jang SS(1), Oishi KT, Egbert RG, Klavins E. Author information: (1)Department of Electrical Engineering, University of Washington,&nbsp;&hellip;<\/p>\n","protected":false},"author":1,"featured_media":1743,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"nf_dc_page":"","om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[259,260,262,280,279],"tags":[],"class_list":["post-1735","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-c","category-computational-biology","category-modeling","category-visualization","category-yeast-spatiotemporal-development"],"jetpack_sharing_enabled":true,"jetpack_featured_media_url":"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2016\/01\/Screen-Shot-2016-12-02-at-4.57.24-PM.png?fit=418%2C283&ssl=1","_links":{"self":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1735","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/comments?post=1735"}],"version-history":[{"count":4,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1735\/revisions"}],"predecessor-version":[{"id":1751,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1735\/revisions\/1751"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/media\/1743"}],"wp:attachment":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/media?parent=1735"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/categories?post=1735"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/tags?post=1735"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}