{"id":1731,"date":"2017-07-19T00:06:51","date_gmt":"2017-07-19T00:06:51","guid":{"rendered":"http:\/\/ladam.info\/?p=1731"},"modified":"2019-01-19T00:33:51","modified_gmt":"2019-01-19T00:33:51","slug":"pacha-yeast-morphogenetic-engineering-of-yeast-microcolonies","status":"publish","type":"post","link":"https:\/\/ladam.info\/index.php\/2017\/07\/19\/pacha-yeast-morphogenetic-engineering-of-yeast-microcolonies\/","title":{"rendered":"PACHA.YEAST: Morphogenetic engineering of yeast Microcolonies"},"content":{"rendered":"\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\"><p> Incas regarded <strong>space<\/strong> and <strong>time<\/strong> as a single concept, referred to as <strong>pacha<\/strong> ( Quechua: <strong>pacha<\/strong>, Aymara: <strong>pacha<\/strong>). <\/p><\/blockquote>\n\n\n\n<p class=\"wp-block-paragraph\">A poster of my work on PACHA.YEAST:<\/p>\n\n\n\n<figure class=\"wp-block-image\"><img data-recalc-dims=\"1\" decoding=\"async\" width=\"1024\" height=\"770\" loading=\"lazy\" src=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/poster_pachayeast.png?resize=1024%2C770&#038;ssl=1\" alt=\"\" class=\"wp-image-1732\" srcset=\"https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/poster_pachayeast.png?resize=1024%2C770&amp;ssl=1 1024w, https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/poster_pachayeast.png?resize=300%2C226&amp;ssl=1 300w, https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/poster_pachayeast.png?resize=768%2C577&amp;ssl=1 768w, https:\/\/i0.wp.com\/ladam.info\/wp-content\/uploads\/2019\/01\/poster_pachayeast.png?w=1157&amp;ssl=1 1157w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Highlights:<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Lab automation with Apprent&#8217;yeast: <strong>learned patterns <\/strong>to automatically design plasmids from lab data (inferred a probabilistic context-free<br> grammar (PCFG))<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Adam, L.&nbsp;&amp; Klavins, E. (2015<strong>). archiYEAST: a command-line synthetic yeast architect<\/strong>.&nbsp;<em>International Workshop&nbsp;on Bio-Design Automation (IWBDA) in Seattle, WA.<\/em><\/li><\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Graph grammar<\/strong> for LYSD, the Language for Yeast Spatiotemporal Development<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Image processing<\/strong> of microcolonies<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Incas regarded space and time as a single concept, referred to as pacha ( Quechua: pacha, Aymara: pacha). A poster of my work on PACHA.YEAST: Highlights: Lab automation with Apprent&#8217;yeast: learned patterns to automatically design plasmids from lab data (inferred a probabilistic context-free grammar (PCFG)) Adam, L.&nbsp;&amp; Klavins, E. (2015). archiYEAST: a command-line synthetic yeast&nbsp;&hellip;<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"nf_dc_page":"","om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[260,258,254,279],"tags":[],"class_list":["post-1731","post","type-post","status-publish","format-standard","hentry","category-computational-biology","category-python","category-synthetic-biology","category-yeast-spatiotemporal-development"],"jetpack_sharing_enabled":true,"jetpack_featured_media_url":"","_links":{"self":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1731","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/comments?post=1731"}],"version-history":[{"count":2,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1731\/revisions"}],"predecessor-version":[{"id":1734,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1731\/revisions\/1734"}],"wp:attachment":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/media?parent=1731"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/categories?post=1731"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/tags?post=1731"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}