{"id":1672,"date":"2014-06-18T21:52:40","date_gmt":"2014-06-18T21:52:40","guid":{"rendered":"http:\/\/ladam.info\/?p=1672"},"modified":"2019-01-18T21:58:37","modified_gmt":"2019-01-18T21:58:37","slug":"the-synthetic-biology-open-language-sbol-provides-a-community-standard-for-communicating-designs-in-synthetic-biology","status":"publish","type":"post","link":"https:\/\/ladam.info\/index.php\/2014\/06\/18\/the-synthetic-biology-open-language-sbol-provides-a-community-standard-for-communicating-designs-in-synthetic-biology\/","title":{"rendered":"The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Authors:<\/strong> Michal Galdzicki, Kevin P Clancy, Ernst Oberortner, Matthew Pocock, Jacqueline Y Quinn, Cesar A Rodriguez, Nicholas Roehner, Mandy L Wilson, Laura Adam, J Christopher Anderson, Bryan A Bartley, Jacob Beal, Deepak Chandran, Joanna Chen, Douglas Densmore, Drew Endy, Raik Gr\u00fcnberg, Jennifer Hallinan, Nathan J Hillson, Jeffrey D Johnson, Allan Kuchinsky, Matthew Lux, Goksel Misirli, Jean Peccoud, Hector A Plahar, Evren Sirin, Guy-Bart Stan, Alan Villalobos, Anil Wipat, John H Gennari, Chris J Myers, Herbert M Sauro<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Publication <\/strong>date2014\/6 <\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Journal&nbsp;<\/strong>Nature biotechnology Volume32 Issue6 Pages545 <\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"abstract\">Abstract<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML\/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/www.nature.com\/articles\/nbt.2891\">https:\/\/www.nature.com\/articles\/nbt.2891<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Authors: Michal Galdzicki, Kevin P Clancy, Ernst Oberortner, Matthew Pocock, Jacqueline Y Quinn, Cesar A Rodriguez, Nicholas Roehner, Mandy L Wilson, Laura Adam, J Christopher Anderson, Bryan A Bartley, Jacob Beal, Deepak Chandran, Joanna Chen, Douglas Densmore, Drew Endy, Raik Gr\u00fcnberg, Jennifer Hallinan, Nathan J Hillson, Jeffrey D Johnson, Allan Kuchinsky, Matthew Lux, Goksel Misirli,&nbsp;&hellip;<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"nf_dc_page":"","om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[260,10,269,254,273],"tags":[],"class_list":["post-1672","post","type-post","status-publish","format-standard","hentry","category-computational-biology","category-mynews","category-publications-peer-reviewed","category-synthetic-biology","category-synthetic-biology-open-language-sbol"],"jetpack_sharing_enabled":true,"jetpack_featured_media_url":"","_links":{"self":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1672","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/comments?post=1672"}],"version-history":[{"count":2,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1672\/revisions"}],"predecessor-version":[{"id":1678,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/posts\/1672\/revisions\/1678"}],"wp:attachment":[{"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/media?parent=1672"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/categories?post=1672"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ladam.info\/index.php\/wp-json\/wp\/v2\/tags?post=1672"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}