LYSD: Language for Yeast Spatiotemporal Development
LYSD is a language a created to specify a phenotype. It can be compiled down into a genetic designs, which ultimately can be automatically build into a lab (check out Aquarium from the Klavins lab; I used it with a python API). We could formally verify a programmed phenotype: microscopy images can be analysed and …
UW CoMotion funds ebio·ome
I received the Innovation Fund in 2016. EE Students and Faculty Receive 2016 CoMotion Innovation Fund. July 7, 2016 by UW EE department (PR). http://www.ee.washington.edu/spotlight/ee-students-and-faculty-receive-2016-comotion-innovation-fund/ I was a commercialization fellow for 2017.
Judging at iGEM
2010-2016: Judge at the Jamboree 2014: Committee member Policy and Practices New track 2012: Judge at aGEM, Edmonton, Alberta, Canada (invited) 2010-2011: Advisor Virginia Tech Team and Virginia Tech-ENSIMAG Biosecurity Team
Gro for snowflake yeast
Gro is a software written in C++ using QT. Gro is a programming language and a 2D simulation environment for cells. The physics and front end has been implemented for e.coli. Specification and simulation of synthetic multicelled behaviors. Jang SS(1), Oishi KT, Egbert RG, Klavins E. Author information: (1)Department of Electrical Engineering, University of Washington, …
[OVERVIEW] My BioCAD tools
Design: GenoCAD – Rule-based genetic design tools user-friendly and Domain Specific Language M. Galdzicki, K. P. Clancy, E. Oberortner, M. Pocock, J. Y. Quinn, C. a Rodriguez, N. Roehner, M. L. Wilson, L. Adam, J. C. Anderson, B. a Bartley, J. Beal, D. Chandran, J. Chen, D. Densmore, D. Endy, R. Grünberg, J. Hallinan, N. …
Speaking at Biological and Chemical Security in an Age of Responsible Innovation
Royal Society, London UK 19th-21st November 2014 Conference on Bio-Chem S&T and Security: Royal Society 19-21st November 2014
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
Authors: Michal Galdzicki, Kevin P Clancy, Ernst Oberortner, Matthew Pocock, Jacqueline Y Quinn, Cesar A Rodriguez, Nicholas Roehner, Mandy L Wilson, Laura Adam, J Christopher Anderson, Bryan A Bartley, Jacob Beal, Deepak Chandran, Joanna Chen, Douglas Densmore, Drew Endy, Raik Grünberg, Jennifer Hallinan, Nathan J Hillson, Jeffrey D Johnson, Allan Kuchinsky, Matthew Lux, Goksel Misirli, …
News coverage GenoCAD
Languages written to design synthetic living systems useful for new products, health care. March 13, 2014 by Emily Kale. https://www.sciencedaily.com/releases/2014/03/140313164524.htm 50 Awesome Open Source Apps You’ve (Probably) Never Heard Of.25 October 2010 by Cynthia Harvey. Originally on datamation.com http://www.freerepublic.com/focus/chat/2615454/posts
Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors
Authors Mandy L Wilson, Sakiko Okumoto, Laura Adam, Jean Peccoud Publication date 2013/11/8 Journal Bioinformatics Volume30 Issue2 Pages 251-257 Abstract Motivation: Expression vectors used in different biotechnology applications are designed with domain-specific rules. For instance, promoters, origins of replication or homologous recombination sites are host-specific. Similarly, chromosomal integration or viral delivery of an expression cassette imposes specific …